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963.
ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method. Other programs (C language)
NucML: Maximum Likelihood Inference of Nucleic Acid Phylogeny
ProtST: Basic Statistics of Protein Sequences
NucST: Basic Statistics of Nucleic Acid Sequences
NJdist: Neighbor Joining Phylogeny from Distance Matrix
Utilities (Perl)
mollist: get identifiers list molrev: reverse DNA sequences
molcat: concatenate sequences molcut: get partial sequences
molmerge: merge sequences nuc2ptn: DNA -> Amino acid
rminsdel: remove INS/DEL sites molcodon: get specified codon sites
molinfo: get varied sites mol2mol: MOLPHY format beautifer
inl2mol: Interleaved -> MOLPHY mol2inl: MOLPHY -> Interleaved
mol2phy: MOLPHY -> Sequential phy2mol: Sequential -> MOLPHY
must2mol: MUST -> MOLPHY etc.
Description
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ProtML est le programme principal de MOLPHY pour inférer des arbres évolutifs des séquences de protéines (acides aminés) en utilisant la méthode du maximum de vraisemblance. Autres programmes (langage C)
NucML[nbsp]: Inférence du maximum de vraisemblance de la phylogénie de l'acide nucléique
protST[nbsp]: Statistiques de base de séquences protéiques
NucST[nbsp]: Statistiques de base de séquences d'acides nucléiques
NJdist[nbsp]: Phylogénie «[nbsp]Neighbor Joining[nbsp]» avec matrices de distance
Utilitaires (Perl)
mollist[nbsp]: obtenir la liste des identifiants molrev[nbsp]: séquences d'ADN inverse
molcat[nbsp]: concaténer des séquences molcut[nbsp]: obtenir des séquences partielles
molmerge[nbsp]: fusionner des séquences nuc2ptn[nbsp]: ADN -> acides aminés
rminsdel[nbsp]: supprimer des sites INS/DEL molcodon[nbsp]: obtenir des sites spécifiques de codons
molinfo[nbsp]: obtenir des sites variés mol2mol[nbsp]: format MOLPHY
inl2mol[nbsp]: entrelacé -> MOLPHY mol2inl[nbsp]: MOLPHY -> entrelacé
mol2phy[nbsp]: MOLPHY -> séquentiel phy2mol[nbsp]: séquentiel -> MOLPHY
must2mol[nbsp]: MUST -> MOLPHY etc.
Translated and reviewed by gisele perreault
Located in Package: molphy
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