Package Descriptions for Ubuntu

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58960 → 58969 of 78723 results First • • • Last
58960.
ProAlign uses a progressive method, such that multiple alignment is created stepwise by performing pairwise alignments in the nodes of a guide tree. Sequences are described with vectors of character probabilities, and each pairwise alignment reconstructs the ancestral (parent) sequence by computing the probabilities of different characters according to an evolutionary model.
 
Description
Le logiciel ProAlign une méthode progressive, telle que l'alignement de multiples séquences est créé par étapes en réalisant des alignements par paires dans les noeuds d'un arbre de guidage . Les séquences sont décrites avec des vecteurs de probabilité de symboles, et chaque alignement par paires, reconstruit la séquence ancestrale (parente) en calculant les probabilités de différents symboles selon un modèle évolutif.
Translated by Michael Vogt
Located in Package: proalign
58961.
multiple sequence alignment using partition function posterior probabilities
 
Summary
alignement de séquences multiples en utilisant les probabilités à postériori de la fonction de partition
Translated by Łukasz Zemczak
Located in Package: probalign
58962.
Probalign uses partition function posterior probability estimates to compute maximum expected accuracy multiple sequence alignments. It performs statistically significantly better than the leading alignment programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0, HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequences. On heteregeneous length datasets containing repeats Probalign alignment accuracy is 10% and 15% than the other three methods when standard deviation of length is at least 300 and 400.
 
Description
(no translation yet)
Located in Package: probalign
58963.
PROBabilistic CONSistency-based multiple sequence alignment
 
Summary
alignement de séquences multiples basé sur la cohérence probabiliste
Translated by Michael Vogt
Located in Package: probcons
58964.
Tool for generating multiple alignments of protein sequences. Using a combination of probabilistic modeling and consistency-based alignment techniques, PROBCONS has achieved the highest accuracies of all alignment methods to date. On the BAliBASE benchmark alignment database, alignments produced by PROBCONS show statistically significant improvement over current programs, containing an average of 7% more correctly aligned columns than those of T-Coffee, 11% more correctly aligned columns than those of CLUSTAL W, and 14% more correctly aligned columns than those of DIALIGN.
 
Description
Ceci est un outil pour la génération d'alignements de séquences multiples de protéines. En utilisant une combinaison de techniques d'alignements basées sur la modélisation probabiliste et la cohérence, le logiciel PROBCONS a atteint les meilleures précisions des méthodes d'alignement à ce jour. Sur la base de données d'alignements de test de performance BAliBASE («[nbsp]Benchmark ALIgnment dataBASE[nbsp]»), les alignements produits par le logiciel PROBCONS montrent une amélioration statistiquement significative sur les logiciels actuels, contenant une moyenne de plus de 7[nbsp]% de colonnes alignées correctement que celles du logiciel T-Coffee, plus de 11[nbsp]% de colonnes alignées correctement que celles du logiciel ClustalW, et plus de 11[nbsp]% de colonnes alignées que celles du logiciel Dialign.
Translated by Michael Vogt
Located in Package: probcons
58965.
Extra programs from the probcons package
 
Summary
Programmes optionnels pour le paquets probcons
Translated by Michael Vogt
Located in Package: probcons-extra
58966.
Contains the convert, project and makgnuplot programs from the probcons package, which have been renamed to pc-compare, pc-project and pc-makegnuplot respectively to avoid collisions with other program names. These programs are mostly useful for testing purposes and are not required for the normal usage of Probcons.
 
Description
Contient les programmes convert, project et makgnuplot pour le paquet probcons qui ont été renommés respectivement en pc-compare, pc-project et pc-makegnuplot pour éviter tout conflit avec des programmes existants. Ces programmes sont particulièrement utiles pour des tests et ne sont pas nécessaires pour un usage normal de probcons.
Translated by Michael Vogt
Located in Package: probcons-extra
58967.
Probcons is a tool for generating multiple alignments of protein sequences.
 
Description
Probcons est un outil générant des alignements multiples de séquences protéiques.
Translated by Michael Vogt
Located in Package: probcons-extra
58968.
Utility to show process environment
 
Summary
(no translation yet)
Located in Package: procenv
58969.
This package contains a command-line tool that displays as much detail about itself and its environment as possible. It can be used as a test tool, to understand the type of environment a process runs in, and for comparing system environments.
 
Description
(no translation yet)
Located in Package: procenv
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