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108.
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Algorithm Based Automatic Contiguation of Assembled Sequences
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Summary
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Algorithm Based Automatic Contiguation of Assembled Sequences
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Translated and reviewed by
Stephan Woidowski
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Located in
Package: abacas
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109.
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ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
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Description
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ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
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Translated and reviewed by
Stephan Woidowski
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Located in
Package: abacas
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110.
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ABACAS uses MUMmer to find alignment positions and identify syntenies of assembled contigs against the reference. The output is then processed to generate a pseudomolecule taking overlapping contigs and gaps in to account. ABACAS generates a comparision file that can be used to visualize ordered and oriented contigs in ACT. Synteny is represented by red bars where colour intensity decreases with lower values of percent identity between comparable blocks. Information on contigs such as the orientation, percent identity, coverage and overlap with other contigs can also be visualized by loading the outputted feature file on ACT.
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Description
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ABACAS uses MUMmer to find alignment positions and identify syntenies of assembled contigs against the reference. The output is then processed to generate a pseudomolecule taking overlapping contigs and gaps in to account. ABACAS generates a comparision file that can be used to visualize ordered and oriented contigs in ACT. Synteny is represented by red bars where colour intensity decreases with lower values of percent identity between comparable blocks. Information on contigs such as the orientation, percent identity, coverage and overlap with other contigs can also be visualized by loading the outputted feature file on ACT.
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Translated and reviewed by
Stephan Woidowski
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Located in
Package: abacas
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111.
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A Better CD Encoder
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Summary
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A Better CD Encoder
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Translated by
mrx5682
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Reviewed by
Anthony Harrington
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Located in
Package: abcde
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112.
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frontend program to cdparanoia, wget, cd-discid, id3, and your favorite Ogg/Vorbis, MP3, FLAC, Ogg/Speex and/or MPP/MP+(Musepack) encoder (defaults to oggenc). Grabs an entire CD and converts each track to the specified formats and then comments or ID3-tags each file, with one command.
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Description
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frontend program to cdparanoia, wget, cd-discid, id3, and your favourite Ogg/Vorbis, MP3, FLAC, Ogg/Speex and/or MPP/MP+(Musepack) encoder (defaults to oggenc). Grabs an entire CD and converts each track to the specified formats and then comments or ID3-tags each file, with one command.
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Translated by
mrx5682
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Reviewed by
Anthony Harrington
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Located in
Package: abcde
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113.
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With abcde you can encode several formats with one single command, using a single CD read operation. It also allows you to read and encode while not on the internet, and later query a CDDB server to tag your files.
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Description
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With abcde you can encode several formats with one single command, using a single CD read operation. It also allows you to read and encode while not on the internet, and later query a CDDB server to tag your files.
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Translated and reviewed by
Stephan Woidowski
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Located in
Package: abcde
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114.
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Translates ABC music description files to PostScript
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Summary
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Translates ABC music description files to PostScript
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Translated and reviewed by
Stephan Woidowski
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Located in
Package: abcm2ps
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115.
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This is the Debian port of the abcm2ps program by Jean-François Moine. The program translates tunes written in the ABC format to PostScript, which can then be viewed using Ghostview et al. or printed on a PostScript printer or through Ghostscript. It supports various semi-standard extensions to the ABC standard, such as multiple voices and staves.
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Description
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This is the Debian port of the abcm2ps program by Jean-François Moine. The program translates tunes written in the ABC format to PostScript, which can then be viewed using Ghostview et al. or printed on a PostScript printer or through Ghostscript. It supports various semi-standard extensions to the ABC standard, such as multiple voices and staves.
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Translated and reviewed by
Stephan Woidowski
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Located in
Package: abcm2ps
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116.
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This program is a vastly improved spin-off from Michael Methfessel's abc2ps, which is no longer supplied as part of Debian. In particular, it contains a lot of extensions to help typeset classical music.
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Description
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This program is a vastly improved spin-off from Michael Methfessel's abc2ps, which is no longer supplied as part of Debian. In particular, it contains a lot of extensions to help typeset classical music.
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Translated by
Alex Denvir
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Reviewed by
ascenseur
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Located in
Package: abcm2ps
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117.
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converter from ABC to MIDI format and back
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Summary
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converter from ABC to MIDI format and back
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Translated and reviewed by
Stephan Woidowski
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Located in
Package: abcmidi
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