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200.
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Here the recursive parallelism paradigm is applied to the linear space profile-profile alignment algorithm. This approach is more time efficient on computers with distributed memory architecture. Traditional approach that relies on precomputing the profile-profile score matrix has also been implemented. Results shown the latter is indeed more appropriate for shared memory multiprocessor computer.
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Description
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Aqí se usa el paradigma de paralelismo recursivo para el algoritmo de alineamiento en el espacio lineal perfil a perfil. Este acercamiento es mejor eficiente en el consumo de tiempo de computadores con la arquitectura de memoria distribuida. La tradicional aproximación que se basa en la precomputación de la matriz de puntuación de perfil-perfil también fue implementada. Los resultados muestran que el último es, de hecho, más apropiado para los ordenadores multiprocesador con memoria compartida.
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Translated by
Samuel Iglesias
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Reviewed by
Paco Molinero
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Located in
Package: clustalw-mpi
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201.
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ClustalX is suggested for its support for local realignments, seaview is a versatile editor of alignments.
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Description
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ClustalX se recomienda por su soporte para realineamientos locales, seaview es un editor de alineamientos versátil.
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Translated by
Paco Molinero
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Reviewed by
Paco Molinero
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Located in
Package: clustalw-mpi
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202.
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The original ClustalW/ClustalX can be found at URL: http://www.clustal.org/download/pre-2/
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Description
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El ClustalW/ClustalX original se puede encontrar en: http://www.clustal.org/download/pre-2/
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Translated and reviewed by
Paco Molinero
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Located in
Package: clustalw-mpi
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203.
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Multiple alignment of nucleic acid and protein sequences (graphical interface)
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Summary
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Alineamiento múltiple de secuencias de ácidos nucleicos y proteínas (interfaz gráfica)
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Translated by
DiegoJ
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Reviewed by
Paco Molinero
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Located in
Package: clustalx
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204.
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This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.
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Description
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Este paquete ofrece una interfaz gráfica para el programa de alineación de secuencia múltiple Clustal. Proporciona un entorno integrado para realizar múltiples alineaciones de secuencia y de perfil y analizar los resultados. El alineamiento de secuencias se muestra en una ventana por pantalla. Posee un esquema de colores versátil para resaltar las características conservadas en la alineación. Para presentaciones profesionales, debe usarse el paquete LaTeX texshade o boxshade.
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Translated by
Michael Vogt
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Located in
Package: clustalx
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205.
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The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.
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Description
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Los menús desplegables en la parte superior de la ventana permiten seleccionar todas las opciones necesarias para la secuencia múltiple tradicional y el perfil de la alineación. Puede cortar y pegar secuencias para cambiar el orden de la alineación; también puede seleccionar un subconjunto de secuencias a ser alineado; puede seleccionar un sub-rango de la alineación para ser realineado e insertado de nuevo en la alineación original.
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Translated by
Michael Vogt
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Located in
Package: clustalx
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206.
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An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.
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Description
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Se puede realizar un análisis de la calidad de alineación y los segmentos con baja puntuación o residuos excepcionales pueden señalarse.
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Translated by
Michael Vogt
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Located in
Package: clustalx
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207.
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Reimplementation of the Eisen-clustering software
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Summary
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(no translation yet)
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Located in
Package: cluster3
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208.
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The open source clustering software available here contains clustering routines that can be used to analyze gene expression data. Routines for hierarchical (pairwise simple, complete, average, and centroid linkage) clustering, k-means and k-medians clustering, and 2D self-organizing maps are included. The routines are available in the form of a C clustering library, an extension module to Python, a module to Perl, as well as an enhanced version of Cluster, which was originally developed by Michael Eisen of Berkeley Lab. The C clustering library and the associated extension module for Python was released under the Python license. The Perl module was released under the Artistic License. Cluster 3.0 is covered by the original Cluster/TreeView license.
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Description
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(no translation yet)
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Located in
Package: cluster3
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209.
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This package only contains the command line and motif gui versions of Cluster 3.0.
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Description
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Este paquete solo incluye la línea de ordenes y las versiones gui motif de Cluster 3.0.
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Translated and reviewed by
Rodrigo Lledó
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Located in
Package: cluster3
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