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101.
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BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. Included is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results.
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Description
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(no translation yet)
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Located in
Package: libnucleotidelikelihoodcore0
Package: beast-mcmc-examples
Package: beast-mcmc
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102.
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This package contains an architecture dependent library.
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Description
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(no translation yet)
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Located in
Package: beast-mcmc-lib
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106.
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biological data-bank updater - web interface
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Summary
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(no translation yet)
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Located in
Package: biomaj-watcher
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107.
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BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily.
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Description
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(no translation yet)
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Located in
Package: biomaj-watcher
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108.
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BioMAJ watcher provides a management interface for the BioMAJ tool. It runs in a web container (Tomcat) and is accessible under the URL http://hostname:portnumber/BmajWatcher
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Description
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(no translation yet)
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Located in
Package: biomaj-watcher
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109.
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The web interface can give anonymous users an overview of available data. Administrators can also use it to manage data-banks, schedule updates via cron, view error logs, or use the integrated data-bank properties editor.
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Description
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(no translation yet)
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Located in
Package: biomaj-watcher
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110.
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blocks database improved searcher (example data)
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Summary
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(no translation yet)
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Located in
Package: blimps-examples
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111.
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This package contains example data.
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Description
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(no translation yet)
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Located in
Package: blimps-examples
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112.
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blocks database improved searcher
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Summary
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(no translation yet)
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Located in
Package: blimps-utils
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113.
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This package contains the binaries.
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Description
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(no translation yet)
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Located in
Package: blimps-utils
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