Translations by nat6091

Currently only ogg and mp3 are supported as source formats.

Fraunhofer FDK AAC Codec Library - frontend binary

This package contains a frontend binary capable of encoding WAVE files using the Fraunhofer FDK AAC Codec Library.

This book is suitable for classroom use as a general introduction to programming concepts.

de novo, parallel, sequence assembler for short reads

ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.

To cite your use of ABySS, please reference ABySS: A parallel assembler for short read sequence data. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. Genome Research, 2009-June.

Processor microcode firmware for AMD CPUs

This package contains microcode patches for all AMD AMD64 processors. AMD releases microcode patches to correct processor behavior as documented in the respective processor revision guides.

Amoeba won first prize in the demo competition at Underscore 02, a demoscene party held in Gothenburg, Sweden.

Integrated package for sequence database handling and analysis (data+scripts)

Integrated package for sequence database handling and analysis (docs)

Amazon Autoscaling Tools

The Command Line Tool serves as the client interface to the Auto Scaling web service. Use this tool to create auto scaling groups and define triggers to launch and terminate Amazon EC2 instances automatically.

hardcore 3D space shooter with spaceship upgrade possibilities

data files for AstroMenace game

AstroMenace is an astonishing hardcore scroll-shooter where brave space warriors may find a great opportunity to hone their combat skills. Gather money during the battle to spend them on turning your spaceship into an ultimate weapon of mass destruction and give hell to swarms of adversaries. Enjoy the wonderfully crafted 3d graphics and high-quality special effects along with a detailed difficulty adjustment and a handy interface of AstroMenace.

Atari 8-bit emulator for SDL

Atari800 is an emulator of Atari 8-bit computer systems including the 400, 800, 1200XL, 600XL, 800XL, 65XE, 130XE, 800XE and the XE Game System, and also of the Atari 5200 SuperSystem console.

The tool AutoLigand, which may help to constrain the location of the binding pocket for yet undescribed proteins, is accompanying the main executable 'runAdt'.

Basilisk II is an Open Source 68k Macintosh emulator. That is, it enables you to run 68k MacOS software on you computer, even if you are using a different operating system. However, you still need a copy of MacOS and a Macintosh ROM image to use Basilisk II.

Some features of Basilisk II: - Emulates either a Mac Classic (which runs MacOS 0.x thru 7.5) or a Mac II series machine (which runs MacOS 7.x, 8.0 and 8.1), depending on the ROM being used - Color video display - CD quality sound output - Floppy disk driver (only 1.44MB disks supported) - Driver for HFS partitions and hardfiles - CD-ROM driver with basic audio functions - Easy file exchange with the host OS via a "Host Directory Tree" icon on the Mac desktop - Ethernet driver - Serial drivers - SCSI Manager (old-style) emulation - Emulates extended ADB keyboard and 3-button mouse - Uses UAE 68k emulation or (under AmigaOS and NetBSD/m68k) real 68k processor

biological data-bank updater - web interface

BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily.

BioMAJ watcher provides a management interface for the BioMAJ tool. It runs in a web container (Tomcat) and is accessible under the URL http://hostname:portnumber/BmajWatcher

The web interface can give anonymous users an overview of available data. Administrators can also use it to manage data-banks, schedule updates via cron, view error logs, or use the integrated data-bank properties editor.

blocks database improved searcher (example data)

metapackage for CUDA-savvy BOINC client and manager

Regular users (righteously) often find it an unbearable nuisance to care for the exact configuration of BOINC for CUDA-savvy graphics cards. This package adds a series of dependencies from the non-free section to the regular boinc package. This also meant this binary package to be redistributed in the contrib section of Debian.

dkms source for the Broadcom STA Wireless driver

Broadcom STA is a binary-only device driver to support the following IEEE 802.11a/b/g/n wireless network cards: BCM4311-, BCM4312-, BCM4313-, BCM4321-, BCM4322-, BCM43224-, BCM43225-, BCM43227-, and BCM43228-based hardware.

The dictionary databases are not included in this package. You have to download bedic-data-4.0.tar.gz from http://kbedic.sourceforge.net. Install the files bg_en.dat and en_bg.dat in /usr/local/share/bedic.

Parsers and algorithms for computational chemistry (data files)

A Python library that provides parsers for computational chemistry log files. It also provides a platform to implement algorithms in a package-independent manner.

This package contains unittests and example log files that could not be included in the main cclib package.

serial and network communications package

C-Kermit is a combined serial and network communication software package offering a consistent, medium-independent, secure cross-platform approach to connection establishment, terminal sessions, file transfer, character-set translation, and automation of communication tasks.

The Unified Medical Language System is a multi-gigabyte database of medical terminology. This a interface for Common Lisp programs that utilizes a SQL database engine and Common Lisp meta-classes for efficient access and formatting.

The Unified Medical Language System is a multi-gigabyte database of medical terminology. This a interface for Common Lisp programs that utilizes a SQL database engine and Common Lisp meta-classes for efficient access and formatting. This package supports the Original Release Format files (ORF).

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

Reimplementation of the Eisen-clustering software

The open source clustering software available here contains clustering routines that can be used to analyze gene expression data. Routines for hierarchical (pairwise simple, complete, average, and centroid linkage) clustering, k-means and k-medians clustering, and 2D self-organizing maps are included. The routines are available in the form of a C clustering library, an extension module to Python, a module to Perl, as well as an enhanced version of Cluster, which was originally developed by Michael Eisen of Berkeley Lab. The C clustering library and the associated extension module for Python was released under the Python license. The Perl module was released under the Artistic License. Cluster 3.0 is covered by the original Cluster/TreeView license.

This package only contains the command line and motif gui versions of Cluster 3.0.

highly configurable system monitor (all features enabled - debug)

Conky is a system monitor that can display just about anything, either on your root desktop or in its own window. Conky has many built-in objects, as well as the ability to execute external programs or scripts (either external or through built-in lua support).

This is a full conky with most compile options enabled:

X11, XDamage, XDBE, Xft, MPD, MOC, math, hddtemp, portmon, RSS, Weather, wireless, IBM, nvidia, eve-online, Imlib2, ALSA mixer, apcupsd, I/O stats, argb, Lua and the cairo and imlib2 lua bindings, Audacious, and XMMS2.

This package contains debugging symbols only.