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ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method. Other programs (C language)
NucML: Maximum Likelihood Inference of Nucleic Acid Phylogeny
ProtST: Basic Statistics of Protein Sequences
NucST: Basic Statistics of Nucleic Acid Sequences
NJdist: Neighbor Joining Phylogeny from Distance Matrix
Utilities (Perl)
mollist: get identifiers list molrev: reverse DNA sequences
molcat: concatenate sequences molcut: get partial sequences
molmerge: merge sequences nuc2ptn: DNA -> Amino acid
rminsdel: remove INS/DEL sites molcodon: get specified codon sites
molinfo: get varied sites mol2mol: MOLPHY format beautifer
inl2mol: Interleaved -> MOLPHY mol2inl: MOLPHY -> Interleaved
mol2phy: MOLPHY -> Sequential phy2mol: Sequential -> MOLPHY
must2mol: MUST -> MOLPHY etc.
Description
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Located in Package: molphy
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